AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Protein regulator of cytokinesis 1 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Protein regulator of cytokinesis 1 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Protein regulator of cytokinesis 1, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Protein regulator of cytokinesis 1. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Protein regulator of cytokinesis 1. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Protein regulator of cytokinesis 1 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Protein regulator of cytokinesis 1
partner:
Reaxense
upacc:
O43663
UPID:
PRC1_HUMAN
Alternative names:
-
Alternative UPACC:
O43663; A6NC44; B4DLR1; H9KV59; Q9BSB6
Background:
Protein Regulator of Cytokinesis 1 (PRC1) is a pivotal component in cell division, specifically in the process of cytokinesis. It functions by cross-linking antiparallel microtubules, facilitating the formation of the midzone essential for cell division. PRC1's role extends to the localization of KIF14 and the recruitment of PLK1 to the spindle, crucial for cell cycle progression. Its interaction with RACGAP1 and ECT2 underscores its importance in cytokinesis.
Therapeutic significance:
Understanding the role of Protein Regulator of Cytokinesis 1 could open doors to potential therapeutic strategies. Its involvement in critical cell division processes and its oncogenic potential in bladder cancer highlight its significance as a target for cancer therapy. By modulating PRC1 activity, it may be possible to develop novel treatments for cancer, emphasizing the need for further research into its mechanisms and interactions.
