AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of DnaJ homolog subfamily C member 13 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into DnaJ homolog subfamily C member 13 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of DnaJ homolog subfamily C member 13, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on DnaJ homolog subfamily C member 13. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of DnaJ homolog subfamily C member 13. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for DnaJ homolog subfamily C member 13 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
DnaJ homolog subfamily C member 13
partner:
Reaxense
upacc:
O75165
UPID:
DJC13_HUMAN
Alternative names:
Required for receptor-mediated endocytosis 8
Alternative UPACC:
O75165; Q3L0T1; Q6PI82; Q6UJ77; Q6ZSW1; Q6ZUT5; Q86XG3; Q96DC1; Q9BWK9
Background:
DnaJ homolog subfamily C member 13, also known as Required for receptor-mediated endocytosis 8, plays a crucial role in membrane trafficking. It is involved in the transport from early endosomes to recycling and late endosomes, impacting the recycling of transferrin and degradation of EGF and EGFR. Its association with WASHC2 connects the WASH complex to the retromer SNX-BAR subcomplex, influencing endosomal membrane tubulation and SNX1 dynamics.
Therapeutic significance:
Parkinson disease, a complex neurodegenerative disorder, is linked to genetic variants in DNAJC13. Understanding the role of DnaJ homolog subfamily C member 13 could open doors to potential therapeutic strategies for Parkinson's, focusing on its involvement in membrane trafficking and protein aggregation.
