AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Ankyrin repeat domain-containing protein 17 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Ankyrin repeat domain-containing protein 17 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Ankyrin repeat domain-containing protein 17, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Ankyrin repeat domain-containing protein 17. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Ankyrin repeat domain-containing protein 17. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Ankyrin repeat domain-containing protein 17 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Ankyrin repeat domain-containing protein 17
partner:
Reaxense
upacc:
O75179
UPID:
ANR17_HUMAN
Alternative names:
Gene trap ankyrin repeat protein; Serologically defined breast cancer antigen NY-BR-16
Alternative UPACC:
O75179; E7EUV3; G5E964; Q6PJ85; Q6PK85; Q6PKA2; Q86XI3; Q8NDR5; Q96I86; Q9H288; Q9H6J9
Background:
Ankyrin repeat domain-containing protein 17, also known as Gene trap ankyrin repeat protein and Serologically defined breast cancer antigen NY-BR-16, plays pivotal roles in cell cycle and DNA regulation. It is crucial in innate immune defense against viruses, enhancing DDX58 and IFIH1 signaling pathways, and participates in NOD2- and NOD1-mediated antibacterial responses. Additionally, it is targeted by enterovirus 71, the major cause of hand, foot, and mouth disease, and is essential for blood vessel maintenance in the circulatory system.
Therapeutic significance:
Linked to Chopra-Amiel-Gordon syndrome, characterized by developmental delay and intellectual disability, the protein's understanding could lead to novel therapeutic strategies for this genetic disorder.
