AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Nucleoside diphosphate phosphatase ENTPD5 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Nucleoside diphosphate phosphatase ENTPD5 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Nucleoside diphosphate phosphatase ENTPD5, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Nucleoside diphosphate phosphatase ENTPD5. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Nucleoside diphosphate phosphatase ENTPD5. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Nucleoside diphosphate phosphatase ENTPD5 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Nucleoside diphosphate phosphatase ENTPD5
partner:
Reaxense
upacc:
O75356
UPID:
ENTP5_HUMAN
Alternative names:
CD39 antigen-like 4; ER-UDPase; Ectonucleoside triphosphate diphosphohydrolase 5; Guanosine-diphosphatase ENTPD5; Inosine diphosphate phosphatase ENTPD5; Nucleoside diphosphatase; Uridine-diphosphatase ENTPD5
Alternative UPACC:
O75356; A1L4C5; Q96RX0
Background:
Nucleoside diphosphate phosphatase ENTPD5, known by various names such as ER-UDPase and Guanosine-diphosphatase ENTPD5, plays a crucial role in cellular processes. It specializes in hydrolyzing nucleoside diphosphates, favoring GDP, IDP, and UDP over ADP and CDP. This activity is vital in the endoplasmic reticulum for regulating protein reglucosylation, essential for glycoprotein folding and quality control.
Therapeutic significance:
Understanding the role of Nucleoside diphosphate phosphatase ENTPD5 could open doors to potential therapeutic strategies. Its involvement in protein reglucosylation and glycoprotein folding highlights its importance in cellular function and disease prevention.
