AI-ACCELERATED DRUG DISCOVERY

Cellular tumor antigen p53

Explore its Potential with AI-Driven Innovation
Predicted by Alphafold

Cellular tumor antigen p53 - Focused Library Design

Available from Reaxense

This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Cellular tumor antigen p53 including:

1. LLM-powered literature research

Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Cellular tumor antigen p53 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.

 Fig. 1. Preliminary target research workflow

2. AI-Driven Conformational Ensemble Generation

Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Cellular tumor antigen p53, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.

 Fig. 2. AI-powered molecular dynamics simulations workflow

3. Binding pockets identification and characterization

We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein�s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.

 Fig. 3. AI-based binding pocket detection workflow

4. AI-Powered Virtual Screening

Our ecosystem is equipped to perform AI-driven virtual screening on Cellular tumor antigen p53. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Cellular tumor antigen p53. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.

 Fig. 4. The screening workflow of Receptor.AI

Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.

The focused library for Cellular tumor antigen p53 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.

Cellular tumor antigen p53

partner:

Reaxense

upacc:

P04637

UPID:

P53_HUMAN

Alternative names:

Antigen NY-CO-13; Phosphoprotein p53; Tumor suppressor p53

Alternative UPACC:

P04637; Q15086; Q15087; Q15088; Q16535; Q16807; Q16808; Q16809; Q16810; Q16811; Q16848; Q2XN98; Q3LRW1; Q3LRW2; Q3LRW3; Q3LRW4; Q3LRW5; Q86UG1; Q8J016; Q99659; Q9BTM4; Q9HAQ8; Q9NP68; Q9NPJ2; Q9NZD0; Q9UBI2; Q9UQ61

Background:

Cellular tumor antigen p53, also known as Phosphoprotein p53 or Tumor suppressor p53, plays a pivotal role in preventing cancer formation. Through its ability to act as a tumor suppressor in various tumor types, p53 induces growth arrest or apoptosis depending on cell type and physiological circumstances. It is involved in cell cycle regulation, negatively regulating cell division by controlling genes required for this process.

Therapeutic significance:

Given its involvement in diseases such as Esophageal cancer, Li-Fraumeni syndrome, Squamous cell carcinoma of the head and neck, Lung cancer, and several others, targeting p53 for therapeutic intervention could revolutionize cancer treatment. Understanding the role of Cellular tumor antigen p53 could open doors to potential therapeutic strategies.

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