AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Plasminogen activator inhibitor 1 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Plasminogen activator inhibitor 1 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Plasminogen activator inhibitor 1, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Plasminogen activator inhibitor 1. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Plasminogen activator inhibitor 1. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Plasminogen activator inhibitor 1 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Plasminogen activator inhibitor 1
partner:
Reaxense
upacc:
P05121
UPID:
PAI1_HUMAN
Alternative names:
Endothelial plasminogen activator inhibitor; Serpin E1
Alternative UPACC:
P05121; B7Z4S0; F8WD53
Background:
Plasminogen activator inhibitor 1 (PAI-1), also known as Serpin E1, plays a pivotal role in the regulation of fibrinolysis, controlling blood clot degradation through its function as a primary inhibitor of tissue-type plasminogen activator (PLAT) and urokinase-type plasminogen activator (PLAU). Beyond its protease inhibitory activity, PAI-1 is instrumental in cell migration, wound healing, and cellular senescence, highlighting its multifaceted role in biological processes.
Therapeutic significance:
The deficiency of PAI-1 leads to a hematologic disorder characterized by increased bleeding, underscoring its therapeutic significance. Targeting PAI-1 could offer novel therapeutic strategies for managing bleeding disorders such as Plasminogen activator inhibitor-1 deficiency, where the balance of fibrinolysis is disrupted. Furthermore, its involvement in cell migration and wound healing presents potential avenues for therapeutic intervention in tissue repair and regenerative medicine.
