AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Myeloperoxidase including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Myeloperoxidase therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Myeloperoxidase, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Myeloperoxidase. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Myeloperoxidase. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Myeloperoxidase includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Myeloperoxidase
partner:
Reaxense
upacc:
P05164
UPID:
PERM_HUMAN
Alternative names:
-
Alternative UPACC:
P05164; A1L4B8; Q14862; Q4PJH5; Q9UCL7
Background:
Myeloperoxidase (MPO) is a crucial component of the host defense system in polymorphonuclear leukocytes, playing a pivotal role in the microbicidal activity against a broad spectrum of organisms. MPO catalyzes the production of hypohalous acids, predominantly hypochlorous acid, enhancing the microbicidal activity of stimulated PMN. Additionally, MPO is involved in the proteolytic cleavage of alpha-1-microglobulin, which inhibits oxidation of low-density lipoprotein particles, thereby limiting vascular damage.
Therapeutic significance:
Myeloperoxidase deficiency, a disorder marked by decreased MPO activity in neutrophils and monocytes, leads to disseminated candidiasis. This condition underscores the therapeutic potential of targeting MPO pathways to treat or manage immune and inflammatory diseases, highlighting the importance of understanding MPO's role in disease mechanisms.
