AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Sodium-dependent serotonin transporter including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Sodium-dependent serotonin transporter therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Sodium-dependent serotonin transporter, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Sodium-dependent serotonin transporter. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Sodium-dependent serotonin transporter. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Sodium-dependent serotonin transporter includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Sodium-dependent serotonin transporter
partner:
Reaxense
upacc:
P31645
UPID:
SC6A4_HUMAN
Alternative names:
5HT transporter; Solute carrier family 6 member 4
Alternative UPACC:
P31645; Q5EE02
Background:
The Sodium-dependent serotonin transporter, also known as 5HT transporter or Solute carrier family 6 member 4, plays a pivotal role in serotonin homeostasis. It transports serotonin across the plasma membrane, limiting its intercellular signaling. This protein is essential in the central nervous system for serotonin uptake, influencing the spatial organization of cortical neurons and the elaboration of sensory circuits. Additionally, it modulates serotonin levels in the gastrointestinal tract and regulates blood serotonin levels, crucial for enteric neurogenesis and gastrointestinal reflexes.
Therapeutic significance:
Understanding the role of the Sodium-dependent serotonin transporter could open doors to potential therapeutic strategies. Its critical function in serotonin homeostasis and signaling termination at synapses highlights its potential as a target for treating disorders related to serotonin imbalance.
