AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Inactive histone-lysine N-methyltransferase 2E including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Inactive histone-lysine N-methyltransferase 2E therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Inactive histone-lysine N-methyltransferase 2E, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Inactive histone-lysine N-methyltransferase 2E. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Inactive histone-lysine N-methyltransferase 2E. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Inactive histone-lysine N-methyltransferase 2E includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Inactive histone-lysine N-methyltransferase 2E
partner:
Reaxense
upacc:
Q8IZD2
UPID:
KMT2E_HUMAN
Alternative names:
Myeloid/lymphoid or mixed-lineage leukemia protein 5
Alternative UPACC:
Q8IZD2; B6ZDE4; B6ZDM3; M4K8J3; Q6P5Y2; Q6PKG4; Q6T316; Q86TI3; Q86W12; Q86WG0; Q86WL2; Q8IV78; Q8IWR5; Q8NFF8; Q9NWE7
Background:
Inactive histone-lysine N-methyltransferase 2E, also known as Myeloid/lymphoid or mixed-lineage leukemia protein 5, plays a pivotal role in gene transcription regulation by associating with chromatin regions of active genes. It is a key regulator of hematopoiesis, involved in myeloid differentiation and hematopoietic stem cell self-renewal, partly through DNA methylation. Additionally, it acts as a crucial cell cycle regulator, influencing multiple stages including G1/S transition and mitotic entry.
Therapeutic significance:
The protein's involvement in O'Donnell-Luria-Rodan syndrome, a neurodevelopmental disorder, underscores its potential as a target for therapeutic intervention. Understanding the role of Inactive histone-lysine N-methyltransferase 2E could open doors to potential therapeutic strategies, especially in treating neurodevelopmental and hematopoietic disorders.
