AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Solute carrier family 4 member 11 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Solute carrier family 4 member 11 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Solute carrier family 4 member 11, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Solute carrier family 4 member 11. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Solute carrier family 4 member 11. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Solute carrier family 4 member 11 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Solute carrier family 4 member 11
partner:
Reaxense
upacc:
Q8NBS3
UPID:
S4A11_HUMAN
Alternative names:
Sodium borate cotransporter 1
Alternative UPACC:
Q8NBS3; B4DKC8; B4DKX9; G3V1M3; Q2TB62; Q2TB63; Q9BXF4; Q9NTW9
Background:
Solute carrier family 4 member 11 (SLC4A11), also known as Sodium borate cotransporter 1, plays a crucial role in maintaining corneal transparency and cellular homeostasis. It functions as a multifunctional transporter, influencing cell morphology and differentiation. Its activities range from acting as a voltage-dependent Na(+)-coupled B(OH)4(-) cotransporter to participating in cellular redox balance and oxidative stress response in the corneal endothelium.
Therapeutic significance:
SLC4A11's dysfunction is linked to several corneal diseases, including Corneal dystrophy and perceptive deafness, Corneal endothelial dystrophy, and Fuchs endothelial corneal dystrophy 4. These associations highlight its potential as a target for therapeutic intervention in ocular diseases. Understanding the role of SLC4A11 could open doors to potential therapeutic strategies.
