AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of NAD-dependent protein deacetylase sirtuin-3, mitochondrial including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into NAD-dependent protein deacetylase sirtuin-3, mitochondrial therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of NAD-dependent protein deacetylase sirtuin-3, mitochondrial, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on NAD-dependent protein deacetylase sirtuin-3, mitochondrial. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of NAD-dependent protein deacetylase sirtuin-3, mitochondrial. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for NAD-dependent protein deacetylase sirtuin-3, mitochondrial includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
NAD-dependent protein deacetylase sirtuin-3, mitochondrial
partner:
Reaxense
upacc:
Q9NTG7
UPID:
SIR3_HUMAN
Alternative names:
Regulatory protein SIR2 homolog 3; SIR2-like protein 3
Alternative UPACC:
Q9NTG7; B7Z5U6; Q9Y6E8
Background:
NAD-dependent protein deacetylase sirtuin-3, mitochondrial, also known as Regulatory protein SIR2 homolog 3 or SIR2-like protein 3, plays a pivotal role in mitochondrial function and energy metabolism. It activates or deactivates mitochondrial target proteins by deacetylating key lysine residues, impacting cellular energy metabolism and regulating tissue-specific ATP levels. Its targets include ACSS1, IDH, GDH, SOD2, PDHA1, LCAD, SDHA, and ATP5PO, crucial for mitochondrial integrity and function.
Therapeutic significance:
Understanding the role of NAD-dependent protein deacetylase sirtuin-3, mitochondrial could open doors to potential therapeutic strategies. Its involvement in energy metabolism and mitochondrial function suggests its potential in addressing metabolic disorders and enhancing mitochondrial health.
