AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Dynein axonemal intermediate chain 1 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Dynein axonemal intermediate chain 1 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Dynein axonemal intermediate chain 1, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Dynein axonemal intermediate chain 1. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Dynein axonemal intermediate chain 1. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Dynein axonemal intermediate chain 1 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Dynein axonemal intermediate chain 1
partner:
Reaxense
upacc:
Q9UI46
UPID:
DNAI1_HUMAN
Alternative names:
Axonemal dynein intermediate chain 1
Alternative UPACC:
Q9UI46; B7Z7U1; Q5T8G7; Q8NHQ7; Q9UEZ8
Background:
Dynein axonemal intermediate chain 1, also known as Axonemal dynein intermediate chain 1, plays a crucial role in the dynein complex of respiratory cilia. This protein is pivotal for the proper function and structure of motile cilia, which are essential for respiratory health and fertility. Its involvement in ciliary movement underscores its significance in cellular and physiological processes.
Therapeutic significance:
The protein is directly linked to primary ciliary dyskinesia and Kartagener syndrome, diseases characterized by ciliary malfunction leading to respiratory infections, bronchiectasis, and reduced fertility. Understanding the role of Dynein axonemal intermediate chain 1 could open doors to potential therapeutic strategies for these conditions, highlighting its importance in medical research and drug discovery.
