AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Palmitoyltransferase ZDHHC2 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Palmitoyltransferase ZDHHC2 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Palmitoyltransferase ZDHHC2, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Palmitoyltransferase ZDHHC2. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Palmitoyltransferase ZDHHC2. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Palmitoyltransferase ZDHHC2 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Palmitoyltransferase ZDHHC2
partner:
Reaxense
upacc:
Q9UIJ5
UPID:
ZDHC2_HUMAN
Alternative names:
Acyltransferase ZDHHC2; Reduced expression associated with metastasis protein; Reduced expression in cancer protein; Zinc finger DHHC domain-containing protein 2; Zinc finger protein 372
Alternative UPACC:
Q9UIJ5; D3DSP5
Background:
Palmitoyltransferase ZDHHC2, known for its versatility, catalyzes the addition of palmitate onto various proteins, impacting cellular processes significantly. Its ability to transfer not only palmitate but also myristate and stearate onto target proteins underscores its broad substrate specificity. ZDHHC2 plays a pivotal role in the nervous system, particularly in synaptic potentiation and protein trafficking, by palmitoylating AKAP5. It also influences synaptic clustering of DLG4 and AMPA-type glutamate receptors, and the localization of RGS7BP to the plasma membrane, which is crucial for G protein-coupled receptor signaling. Additionally, ZDHHC2's involvement in cell adhesion and the regulation of CD9 and CD151 expression highlights its multifunctional nature.
Therapeutic significance:
Understanding the role of Palmitoyltransferase ZDHHC2 could open doors to potential therapeutic strategies.
